/*
    * -------------------------------------------------
    *  HPC cluster config file
    * -------------------------------------------------
    * http://www.hpc.uct.ac.za/
    */

params {
    config_profile_description = 'University of Cape Town High Performance Cluster config file provided by nf-core/configs.'
    config_profile_contact     = 'Katie Lennard (@kviljoen)'
    config_profile_url         = 'http://hpc.uct.ac.za/index.php/hpc-cluster/'

    singularity_cache_dir      = "/bb/DB/bio/singularity-containers/"
    igenomes_base              = '/bb/DB/bio/rna-seq/references'
    max_memory                 = 384.GB
    max_cpus                   = 40
    max_time                   = 1000.h
    hpc_queue                  = 'ada'
    hpc_account                = '--account cbio'
    genome                     = 'GRCh37'
}

singularity {
    enabled    = true
    cacheDir   = params.singularity_cache_dir
    autoMounts = true
}

process {
    resourceLimits = [
        memory: 384.GB,
        cpus: 40,
        time: 1000.h
    ]
    executor       = 'slurm'
    queue          = params.hpc_queue
    // Increasing maxRetries, this will overwrite what we have in base.config
    maxRetries     = 4
    clusterOptions = params.hpc_account
    stageInMode    = 'symlink'
    stageOutMode   = 'rsync'
}

executor {
    queueSize = 15
}