Description

Install the AnnotSV annotations

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

annotsv_version

:string

The AnnotSV annotations version to install e.g. 3.5, 3.4.3 If left empty then exomiser_version must also be empty and default versions for the version of AnnotSV tool will be used

exomiser_version

:string

The Exomiser annotations version to install e.g. 2406 If left empty then annotsv_versions must also be empty and default versions for the version of AnnotSV tool will be used

Output

name:type
description
pattern

annotations

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

AnnotSV_annotations

:file

A folder containing the annotations

AnnotSV_annotations

versions_annotsv

${task.process}

:string

The name of the process

annotsv

:string

The name of the tool

AnnotSV --version | sed 's/AnnotSV //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

annotsv

:string

The name of the tool

AnnotSV --version | sed 's/AnnotSV //'

:eval

The expression to obtain the version of the tool

Tools

annotsv
GPL v3

Annotation and Ranking of Structural Variation